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Darned in 2013: inclusion of model organisms and linking with Wikipedia
Kiran, Anmol M.; O'Mahony, John J.; Sanjeev, Komal; Baranov, Pavel V.
DARNED (DAtabase of RNA EDiting, available at is a centralized repository of reference genome coordinates corresponding to RNA nucleotides having altered templated identities in the process of RNA editing. The data in DARNED are derived from published datasets of RNA editing events. RNA editing instances have been identified with various methods, such as bioinformatics screenings, deep sequencing and/or biochemical techniques. Here we report our current progress in the development and expansion of the DARNED. In addition to novel database features the DARNED update describes inclusion of Drosophila melanogaster and Mus musculus RNA editing events and the launch of a community-based annotation in the RNA WikiProject.
Keyword(s): DNA-sequence differences; RNA editing sites; To-inosine RNA; Human transcriptome; Widespread RNA; Accurate identification; ADAR deaminases; Messenger RNA; Parallel DNA; Database
Publication Date:
Type: Journal article
Peer-Reviewed: Yes
Language(s): English
Institution: University College Cork
Funder(s): Science Foundation Ireland
Citation(s): Kiran, A. M., O'Mahony, J. J., Sanjeev, K. and Baranov, P. V. (2013) 'Darned in 2013: inclusion of model organisms and linking with Wikipedia', Nucleic Acids Research, 41(D1), pp. 258-261. doi: 10.1093/nar/gks961
Publisher(s): Oxford University Press
File Format(s): application/pdf
Related Link(s):
First Indexed: 2017-11-15 06:30:10 Last Updated: 2017-11-23 06:30:12